Basic Information
VIS ID
TVIS30014570
Fusion event
HIV-chr1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
117329507/116786885 (Hg38)
End
117329374/116786885 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/115068; hsa-mir-1182/Downstream/307758;
Nearest TSS
ENST00000473358/Upstream/32418; ENST00000496699/Downstream/122646;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/118886, chr1-CpG: 126/Downstream/122696
Nearby gene
CD2(No orient, 17656)
Upstream sequence
ttgtatccagtgaaactaagctgcataaatgaaggaaagatacagtctttttcagatgaacgaatgctgagagaattcaccactaacaagccagcactac
Downstream sequence
aagaactgcttaaaaggagctctaaatcttgaaaaaaatcttcaaagtacaccaaaatagaacctccttaaagcataaatctcacagcacctataataca
Target sequence
ctgtttaaacaaaacaattatcagccaagaattttgtatccagtgaaactaagctgcataaatgaaggaaagatacagtctttttcagatgaacgaatgctgagagaattcaccactaacaagccagcactac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
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