Basic Information
VIS ID
TVIS30014572
Fusion event
HIV-chr1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p11.1
Reference genome
GRCh37/hg19
Start
121484798/121743000 (Hg38)
End
121484940/121743000 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/4648272; hsa-mir-1182/Downstream/24107587;
Nearest TSS
ENST00000473358/Upstream/162476; ENST00000443018/Downstream/21757512;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/223273, chr1-CpG: 312/Downstream/3342509
Nearby gene
EMBP1(No orient, 171112)
Upstream sequence
cttagaggccttctttggaaacggttttttctcatgtaaggctagacagaagaattcccagtaacttccttgtgttgtgtgcattcaactcacagagttg
Downstream sequence
gtgatgtgtttgttcaactcacagagtttaacctttctgttcatagagcagttaggaaacgctctgtttgtaaagtctgtaagtggatattctgacatct
Target sequence
aacgttcccttagacagagcagatttgaaacactctatttgtgcaatttgcaagtgtagatttcaagcgctttaaggtcaatggcagaaaaggaaatatcttcgtttcaaaactagacagaatcattcccacaaactgcgtt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate