VISDB Viral Integration Site DataBase

VIS ID

TVIS30014574

Fusion event

HIV-PDE4DIP integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.2

Reference genome

Start

End

144928828/148955261 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-505-3p ; hsa-mir-92a-3p ; hsa-let-7a-5p ; hsa-mir-493-3p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-5703 ; hsa-mir-4516 ; hsa-mir-4434 ; hsa-mir-539-5p ; hsa-mir-432-5p ; hsa-mir-3976 ; hsa-mir-6856-5p ; hsa-mir-6758-5p ; hsa-mir-3121-3p ; hsa-mir-452-3p ; hsa-mir-582-5p ; hsa-mir-3618 ; hsa-mir-139-5p ; hsa-mir-670-3p ; hsa-mir-4465 ; hsa-mir-26b-5p ; hsa-mir-26a-5p ; hsa-mir-1297 ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-6513-3p ; hsa-mir-8079 ; hsa-mir-1245a ; hsa-mir-3614-3p

Nearest miRNA

hsa-mir-101-1/Upstream/566898; hsa-mir-1182/Downstream/1537084;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/2112, chr1-CpG: 98/Downstream/147651

Upstream sequence

TACAATATTGGTCATATTTGGTGGCGGGCTGGGGGGACGAGTTTATTTCCCATCCATCCTGGCCCAACTAATTTTAGACCCTAATATGAAAACACCATGT

Downstream sequence

TTAATTTGTAACACCTATGTCTAGTCACAGAAATACTGTAAAGCCCAAATTTAGCTGCGAGGCTCCACTGAAAGAAAAAGCAAAAGAAAAGAAGTACACA

Target sequence

GAGGGCTCCTGGTTTAAAATAAGTACTTACTTAAATTAATATACTTCAGACAATGGGGTTTAATGTATAGAATTAAAGTGTCTTGCCTGAGAATGGTCAGAAATCTTTGTCTCTGCATGGGCTACGTTAGTTAAACAAGGAACTTTCCATATCTCCAAATTGAGAGACTGCCTGAAGATGATCTTTAAAATCCTTCTCCACTCCAAAATCCAGTCACCAAAATATAGTATTTTATTTAAATACGGAGAAAAAAAG