VISDB Viral Integration Site DataBase

VIS ID

TVIS30014577

Fusion event

HIV-VPS45 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.2

Reference genome

Start

End

150064233/150092385 (Hg38)

Orient

-

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-34a-5p ; hsa-mir-186-5p ; hsa-mir-100-5p ; hsa-mir-99a-5p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-186-3p ; hsa-mir-6782-3p ; hsa-mir-4429 ; hsa-mir-320d ; hsa-mir-320c ; hsa-mir-320b ; hsa-mir-320a

Nearest miRNA

hsa-mir-101-1/Upstream/1704022; hsa-mir-1182/Downstream/399960;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/24627, chr1-CpG: 190/Downstream/57120

Upstream sequence

TTCTCTTTCTTAATAGCTCGTGTCTGCAGTTGTTGAATATGGTGGTAAACGAGTCAGAGGAAGTGACCTCTTCAGCCCCAAAGATGCTGTGGCTATCACC

Downstream sequence

AAACAATTCCTCAAAGGACTGAAGGTATAGACATCTCCTCTATGCTCTCCTGAGTGAGAACAGTTGAAGTCCTTGAGGCTGAGAGTGAATGAATATGATC

Target sequence

TTATTATATTCTTAGCTCTAACGAATGATAAATCATACTATTTTTATTTACAGAAATGTATAATTCTGTCTTTTCATTTTTGTTTCCTTAATAAAATTATTTTCTTATGAAATGGGCTTCCTGATGCCTAAGCAATCAAAATTTGCTTCTCTTTCTTAATAGCTCGTGTCTGCAGTTGTTGAATATGGTGGTAAACGAGTCAGAGGAAGTGACCTCTTCAGCCCCAAAGATGCTGTGGCTATCACC