VISDB Viral Integration Site DataBase

VIS ID

TVIS30014584

Fusion event

HIV-MINDY1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

150974845/151002202 (Hg38)

Orient

+

Location type

Exonic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4433a-3p ; hsa-mir-6504-3p ; hsa-mir-4433b-3p ; hsa-mir-4700-3p ; hsa-mir-1303 ; hsa-mir-5096 ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-193b-5p ; hsa-mir-483-5p ; hsa-mir-1297 ; hsa-mir-1976 ; hsa-mir-26a-5p ; hsa-mir-26b-5p ; hsa-mir-3653-5p ; hsa-mir-4279 ; hsa-mir-4465 ; hsa-mir-4722-3p ; hsa-mir-4740-3p ; hsa-mir-6513-3p ; hsa-mir-6727-3p ; hsa-mir-6747-3p ; hsa-mir-6778-3p ; hsa-mir-8062

Nearest miRNA

hsa-mir-101-1/Upstream/450188; hsa-mir-1182/Downstream/543594;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/26728, chr1-CpG: 42/Downstream/6057

Upstream sequence

AAGTAAGTCAGGGAAGAGTACTCCCTGATATTTTTTGCACCCCTAACTGCATGTTCTCTTACCTTCCACTGAAGAAAGAGGATGTTCATGATGGCAAGGA

Downstream sequence

CCAAGGGTTGGCCCCGGTGGAGCTGAGCTAGCTTCAGGCAGAGGGGACTCAAGGTTGTCCCCACACTGGCTAGGCAGCAAAGCTTGGTCTGCTGGCTCCC

Target sequence

GAGGGCAAGGGCCGTTAGTGCTCTGGGTGATGATGGGTGTCTGTTCTCCTTTCCAAGGGATCCACTTGACACAGTAGAAATCTGGCTCAGGCTGTCGGGTCCTGGGGGACTGAGGAAGCTCCTGGGGCATGGAGCATGCCCTTATTGTCTCTACTTCAGGCAGTGTC