VISDB Viral Integration Site DataBase

VIS ID

TVIS30014591

Fusion event

HIV-CHTOP integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

153617259/153644611 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-296-3p ; hsa-mir-193b-3p ; hsa-mir-186-5p ; hsa-mir-197-3p ; hsa-mir-92a-3p ; hsa-let-7a-5p ; hsa-let-7b-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-609 ; hsa-mir-4257 ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-6077 ; hsa-mir-6804-5p ; hsa-mir-8065 ; hsa-mir-586 ; hsa-mir-5700 ; hsa-mir-1287-3p ; hsa-mir-4457 ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-449b-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2098720; hsa-mir-1182/Downstream/45094;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/10113, chr1-CpG: 36/Downstream/13978

Upstream sequence

TTGTTCCTGTGTCAGAAAAACTCAGTCTCCTGACACATGAGGTCAGCTAGCTCATTAGACTTGATAAGTTTAAGGACAGGTGAGATGACTTTCCAGAAGG

Downstream sequence

TTAAAATTATAGTTGCCAGTTAATTATTTTCCTTTATTGATAGAATAAAATTTGTTAAAATAGCATTTAGAGATGATCATGTGATAGAGGATTCATTATG

Target sequence

GTCTCCAATAAACTTAATTTGAAAACTGTCTTGTCTTCACACCCCTGATGCTCTGTGCTCTTGTTACCACCTCCCTATCTTACCAAATGGGGTTATCTGTCATGTATTTTAATTATGAACTTAGTGAATCTCAAATGTTAGGTAATTTTATCTTAGGATTGATTAAGGTTTT