Basic Information
VIS ID
TVIS30014598
Fusion event
HIV-LY9 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
160778046/160808256 (Hg38)
End
160778284/160808256 (Hg38)
Orient
+
Location type
Intronic
Target gene
LY9
Nearest miRNA
hsa-mir-101-1/Upstream/908177; hsa-mir-1182/Downstream/418930;
Nearest TSS
ENST00000473358/Upstream/12045; ENST00000479663/Downstream/1493;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/6093, chr1-CpG: 41/Downstream/212672
Nearby gene
LY9(No orient, 5563)
Upstream sequence
gttgcagcagcagctcacagcccactactttacccagtctcagtcacagcagcattcacttcctaggaccagaaactgcagcccacacctctcttgctac
Downstream sequence
tggtagtttcagggattgggagggtcaaaggggtctcatgtggccaggactgcatgattctgcagtgggatgtgggccactggaggtctctcgctcacct
Target sequence
ttagctctacctgcagagtgctcccaatccatactctagtcttggcagcaacagttttagttttcctaacacctcagacccagcactgttgggccccaggacagcgtgcattctgccaaaggctcagtttgaaaatggtcccttactataactgcagaggtctcagaaagagtatggaacccagcaggagctccctccctggagcagttccgccccacagtctcccagcagctcccta
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate