VISDB Viral Integration Site DataBase

VIS ID

TVIS30014602

Fusion event

HIV-POU2F1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q24.2

Reference genome

Start

End

167241519/167272345 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-215-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-101-3p ; hsa-mir-98-5p ; hsa-mir-26b-5p ; hsa-mir-324-3p ; hsa-mir-15b-5p ; hsa-mir-30c-5p ; hsa-mir-515-3p ; hsa-mir-519e-3p ; hsa-mir-33b-3p ; hsa-mir-6778-3p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-6836-3p ; hsa-mir-4311 ; hsa-mir-346 ; hsa-mir-569 ; hsa-mir-632 ; hsa-mir-654-3p ; hsa-mir-1185-5p ; hsa-mir-513b-3p ; hsa-mir-4288 ; hsa-mir-3679-5p ; hsa-mir-6847-5p ; hsa-mir-539-5p ; hsa-mir-5680 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-3161 ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-449a ; hsa-mir-190a-3p ; hsa-mir-935 ; hsa-mir-1277-5p ; hsa-mir-5011-5p ; hsa-let-7a-2-3p ; hsa-let-7g-3p ; hsa-mir-3940-3p ; hsa-mir-3646 ; hsa-mir-185-5p ; hsa-mir-1257 ; hsa-mir-4306 ; hsa-mir-3150b-3p ; hsa-mir-4644 ; hsa-mir-4784 ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520e ; hsa-mir-519c-3p ; hsa-mir-520a-3p ; hsa-mir-519b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-519a-3p ; hsa-mir-302e ; hsa-mir-3163 ; hsa-mir-7977 ; hsa-mir-599 ; hsa-mir-100-3p ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-450a-1-3p ; hsa-mir-3915 ; hsa-mir-4799-5p ; hsa-mir-4425 ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-1292-5p ; hsa-mir-3928-3p ; hsa-mir-4259 ; hsa-mir-605-5p ; hsa-mir-489-3p ; hsa-mir-5192 ; hsa-mir-4790-3p ; hsa-mir-3919 ; hsa-mir-3529-3p ; hsa-mir-144-5p ; hsa-mir-18a-3p ; hsa-mir-1913 ; hsa-mir-889-3p ; hsa-mir-6504-3p ; hsa-mir-410-3p ; hsa-mir-3120-3p ; hsa-mir-144-3p ; hsa-mir-4756-3p ; hsa-mir-6880-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-629-3p ; hsa-mir-6873-3p ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-1273g-5p ; hsa-mir-203a-5p ; hsa-mir-6886-3p ; hsa-mir-942-5p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-5088-3p ; hsa-mir-147a ; hsa-mir-644a ; hsa-mir-3911 ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-623 ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-6832-3p ; hsa-mir-141-5p ; hsa-mir-3157-3p ; hsa-mir-502-5p ; hsa-mir-938 ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-6776-3p ; hsa-mir-497-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-384 ; hsa-mir-3685 ; hsa-mir-627-3p ; hsa-mir-4509 ; hsa-mir-4744 ; hsa-mir-5009-3p ; hsa-mir-148a-5p ; hsa-mir-4445-5p ; hsa-mir-4775 ; hsa-mir-487a-5p ; hsa-mir-487b-5p ; hsa-mir-515-5p ; hsa-mir-519d-5p ; hsa-mir-519e-5p ; hsa-mir-5695 ; hsa-mir-590-3p ; hsa-mir-659-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1117547; hsa-mir-1182/Downstream/726315;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/50221, chr1-CpG: 50/Downstream/166930

Upstream sequence

CTTTTTTTGGTGAATGGTTTTCATTCTGAAAAATGTCAAAATAGTAAATATTACCTTTTTTTTTTTTTTTTGACAATGCCCCCTTTTTTGGCTGGGAATG

Downstream sequence

TTCTTACTCTGGTTTTGTAAGTATGTTCCCACACATTAGGATTTCAAAAAAAAAAAAAAACCATATTCAGAACtgtattagtcagttcttgcattgctgt

Target sequence

AAAATAGTAAATATTACCTTTTTTTTTTTTTTTTGACAATGCCCCCTTTTTTGGCTGGGAATG