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TVIS30014603
Basic Information
VIS ID
TVIS30014603
Fusion event
HIV-POU2F1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
167276059/167306822 (Hg38)
End
167276029/167306822 (Hg38)
Orient
-
Location type
Intronic
Target gene
POU2F1
miRNAs that regulate target gene
hsa-mir-9-5p
;
hsa-mir-215-5p
;
hsa-mir-34a-5p
;
hsa-mir-192-5p
;
hsa-mir-101-3p
;
hsa-mir-98-5p
;
hsa-mir-26b-5p
;
hsa-mir-324-3p
;
hsa-mir-15b-5p
;
hsa-mir-30c-5p
;
hsa-mir-515-3p
;
hsa-mir-519e-3p
;
hsa-mir-33b-3p
;
hsa-mir-6778-3p
;
hsa-mir-6791-3p
;
hsa-mir-6829-3p
;
hsa-mir-6836-3p
;
hsa-mir-4311
;
hsa-mir-346
;
hsa-mir-569
;
hsa-mir-632
;
hsa-mir-654-3p
;
hsa-mir-1185-5p
;
hsa-mir-513b-3p
;
hsa-mir-4288
;
hsa-mir-3679-5p
;
hsa-mir-6847-5p
;
hsa-mir-539-5p
;
hsa-mir-5680
;
hsa-mir-548t-5p
;
hsa-mir-548az-5p
;
hsa-mir-3161
;
hsa-mir-3609
;
hsa-mir-548ah-5p
;
hsa-mir-449a
;
hsa-mir-190a-3p
;
hsa-mir-935
;
hsa-mir-1277-5p
;
hsa-mir-5011-5p
;
hsa-let-7a-2-3p
;
hsa-let-7g-3p
;
hsa-mir-3940-3p
;
hsa-mir-3646
;
hsa-mir-185-5p
;
hsa-mir-1257
;
hsa-mir-4306
;
hsa-mir-3150b-3p
;
hsa-mir-4644
;
hsa-mir-4784
;
hsa-mir-302a-3p
;
hsa-mir-302b-3p
;
hsa-mir-302c-3p
;
hsa-mir-302d-3p
;
hsa-mir-372-3p
;
hsa-mir-373-3p
;
hsa-mir-520e
;
hsa-mir-519c-3p
;
hsa-mir-520a-3p
;
hsa-mir-519b-3p
;
hsa-mir-520b
;
hsa-mir-520c-3p
;
hsa-mir-520d-3p
;
hsa-mir-519a-3p
;
hsa-mir-302e
;
hsa-mir-3163
;
hsa-mir-7977
;
hsa-mir-599
;
hsa-mir-100-3p
;
hsa-mir-583
;
hsa-mir-1276
;
hsa-mir-450a-1-3p
;
hsa-mir-3915
;
hsa-mir-4799-5p
;
hsa-mir-4425
;
hsa-mir-8059
;
hsa-mir-4471
;
hsa-mir-1292-5p
;
hsa-mir-3928-3p
;
hsa-mir-4259
;
hsa-mir-605-5p
;
hsa-mir-489-3p
;
hsa-mir-5192
;
hsa-mir-4790-3p
;
hsa-mir-3919
;
hsa-mir-3529-3p
;
hsa-mir-144-5p
;
hsa-mir-18a-3p
;
hsa-mir-1913
;
hsa-mir-889-3p
;
hsa-mir-6504-3p
;
hsa-mir-410-3p
;
hsa-mir-3120-3p
;
hsa-mir-144-3p
;
hsa-mir-4756-3p
;
hsa-mir-6880-3p
;
hsa-mir-6833-3p
;
hsa-mir-4768-5p
;
hsa-mir-629-3p
;
hsa-mir-6873-3p
;
hsa-mir-6867-3p
;
hsa-mir-4713-5p
;
hsa-mir-1273g-5p
;
hsa-mir-203a-5p
;
hsa-mir-6886-3p
;
hsa-mir-942-5p
;
hsa-mir-6845-3p
;
hsa-mir-4685-3p
;
hsa-mir-4287
;
hsa-mir-7113-3p
;
hsa-mir-4469
;
hsa-mir-5088-3p
;
hsa-mir-147a
;
hsa-mir-644a
;
hsa-mir-3911
;
hsa-mir-5006-3p
;
hsa-mir-4755-5p
;
hsa-mir-211-5p
;
hsa-mir-204-5p
;
hsa-mir-623
;
hsa-mir-302d-5p
;
hsa-mir-302b-5p
;
hsa-mir-6832-3p
;
hsa-mir-141-5p
;
hsa-mir-3157-3p
;
hsa-mir-502-5p
;
hsa-mir-938
;
hsa-mir-1915-5p
;
hsa-mir-6841-3p
;
hsa-mir-6776-3p
;
hsa-mir-497-3p
;
hsa-mir-548t-3p
;
hsa-mir-548ap-3p
;
hsa-mir-548aa
;
hsa-mir-384
;
hsa-mir-3685
;
hsa-mir-627-3p
;
hsa-mir-4509
;
hsa-mir-4744
;
hsa-mir-5009-3p
;
hsa-mir-148a-5p
;
hsa-mir-4445-5p
;
hsa-mir-4775
;
hsa-mir-487a-5p
;
hsa-mir-487b-5p
;
hsa-mir-515-5p
;
hsa-mir-519d-5p
;
hsa-mir-519e-5p
;
hsa-mir-5695
;
hsa-mir-590-3p
;
hsa-mir-659-3p
Nearest miRNA
hsa-mir-101-1/Upstream/1152024; hsa-mir-1182/Downstream/691838;
Nearest TSS
ENST00000473358/Upstream/85924;
ENST00000470928/Downstream/22222;
Nearest CpG islands
None/Target,
chr1-CpG: 111/Upstream/84698
,
chr1-CpG: 50/Downstream/132453
Upstream sequence
atccctctcttcttgtcttcatctgttctatgtctgtctttgttcaaatttcccctttatataaggatagcaatcatattggattaggcccagtcctaat
Downstream sequence
gaccagatcttaacatttgcaaaggccctatttctcactaaggtcgtatttacaggtataaagggtgtagactttaacatctttttggggaagacacagt
Target sequence
caatcatattggattaggcccagtcctaat
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Sample Information
×
Sample name
PT1
Sample type
PBMC
Age
47
Gender
Male
CpG Island Information
×
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