Basic Information
VIS ID
TVIS30014605
Fusion event
HIV-SELP integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
169559927/169590689 (Hg38)
End
169559999/169590689 (Hg38)
Orient
+
Location type
Intronic
Target gene
SELP
Nearest miRNA
hsa-mir-101-1/Upstream/1215068; hsa-mir-1182/Downstream/560689;
Nearest TSS
ENST00000473358/Upstream/4101; ENST00000496973/Downstream/881;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/104350, chr1-CpG: 30/Downstream/204143
Upstream sequence
TTCTTCCGATATTGAGTGGGTATGGGGCAAGGGTGCTGGATGTCTACGACAATAGAGTTCATATAAGGATTTCCATGTCCTCCAGGACGGAAATGTCTTT
Downstream sequence
AAATACCCTTGGGGGCATACTGTCCCTTTTTGAAAACTATTGCTAGATTATAAATAGCAAGGGGTACAGGAcacaaaagaattgtccaacatcccacata
Target sequence
AAAAGATATCCAGCACCCCTGCCTCCTGCCCACTCAATGTCAGTAGAACTCTTGTTCATTACAAAAATAAAA
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate