VISDB Viral Integration Site DataBase

VIS ID

TVIS30014615

Fusion event

HIV-ZBTB41 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q31.3

Reference genome

Start

End

197159786/197190876 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-374b-5p ; hsa-mir-93-5p ; hsa-mir-4328 ; hsa-mir-4795-3p ; hsa-mir-3149 ; hsa-mir-5588-5p ; hsa-mir-496 ; hsa-mir-4799-3p ; hsa-mir-4720-5p ; hsa-mir-6868-5p ; hsa-mir-3128 ; hsa-mir-126-5p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-let-7c-3p ; hsa-mir-3924 ; hsa-mir-3923 ; hsa-mir-551b-5p

Nearest miRNA

hsa-mir-101-1/Upstream/608395; hsa-mir-1182/Downstream/1667997;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/44015, chr1-CpG: 62/Downstream/9999

Upstream sequence

TTCACTCTTAGTCTTCTTAATGGAAATAAATTCTTGTGCATTTTCAGGATGAAATCTATCAGAGGAAAAGAAAAAGATTATTAGGAAAAGGTTATATTAG

Downstream sequence

TTAAATCAATATTCCATGTGAATATGTTGACAGTAATTACCAGGATCAAGTACTGATTCCTTTCATAATGAGACAAGTAGGCATAGATGAGCTCTTTAAG

Target sequence

TGAGATAAGCTAAGTCACATTACTTTAAAACCTAATTACTTTACTTCCCCAAAAGACGTTGCATTTACTTTGGTTTTCTAATTTGTTTTAATTAAAAACTCTTACATCACATTTCCAACTTTCACTCTTAGTCTTCTTAATGGAAATAAATTCTTGTGCATTTTCAGGATGAAATCTATCAGAGGAAAAGAAAAAGATTATTAGGAAAAGGTTATATTAG