VISDB Viral Integration Site DataBase

VIS ID

TVIS30014617

Fusion event

HIV-ATP6V1G3 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q31.3

Reference genome

Start

End

198506485/198537659 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-183-5p ; hsa-mir-377-3p ; hsa-mir-891a-3p ; hsa-mir-342-3p ; hsa-mir-1228-3p ; hsa-mir-6865-5p ; hsa-mir-6815-5p ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-578 ; hsa-mir-526b-5p ; hsa-mir-570-3p ; hsa-mir-4635 ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1955178; hsa-mir-1182/Downstream/321214;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/378425, chr1-CpG: 36/Downstream/1497687

Upstream sequence

TGACTTCTTGGTCCTCATTCTGAATATCATTCTGCCTTAATATGTCAGAATTTCAAATGAATCTTTGTATGAAAAAATAAAGCAAAAGTATATGGGTTTA

Downstream sequence

CTAAAATGATAACTATCTTTACCTCTCCTGTCATCATGCCTCCTTTCCCTTTTTAAAATAGTCATTtgtgcatttatctcactgggaagttctttaagga

Target sequence

AAATGATTAACATGTGAATTGCTGTtttctttctctttccctctttctcgcccttccttcttcctgtctttctttttctTAAAAATAATACACTCAAGAGTCTTGTTCTAGCACTTTATGCCCAAGTTTCTGAGAGTCTTGCAAATAAATGGATTTAAGAAAGAGAAAATGACCATAGACCTTCTACAATGGTGTTCACTATTGTGACTTCTTGGTCCTCATTCTGAATATCATTCTGCCTTAATATGTCAGAAT