VISDB Viral Integration Site DataBase

VIS ID

TVIS30014637

Fusion event

HIV-KDM5B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

202734849/202765984 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-29c-3p ; hsa-mir-296-3p ; hsa-let-7i-5p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-1261 ; hsa-mir-376c-5p ; hsa-mir-376b-5p ; hsa-mir-6124 ; hsa-mir-3185 ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-651-3p ; hsa-mir-4796-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-629-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-3925-3p ; hsa-mir-766-3p ; hsa-mir-424-5p ; hsa-mir-194-5p ; hsa-mir-137 ; hsa-mir-29a-3p

Nearest miRNA

hsa-mir-101-1/Upstream/762748; hsa-mir-1182/Downstream/2682318;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/55343, chr1-CpG: 160/Downstream/40891

Nearest cancer related gene

KDM5B(OG, No orient, 0)

Upstream sequence

AGGCTAGGCAGGAATCCAAAACCTTCATACCTCTGGTATGGGAACGAGATCACTAGAAAAATACTCTTCTTCCTTTCCCAGGGAAAGCTTCTCAGAGCAG

Downstream sequence

AAAAATCTTAAAGCAAATAATCCTTCTctagcctggacaacacagtgagaccttgtctttattaaaaatttttttttaattagctaggcatgcatggcat

Target sequence

TATTTATCTATTTCTTCAGAAAACAAAATGGCTGATTTTTTTCATTTTTGATAATTATTGAAAACCAGTTACTGATTTAGTATGATTAATGCAATATGAGGCTTCCCAGCTCTAAACAGTTCCCTATATATTATCTCTGAGTCCTAAAACTCACATATCCATCAGGCTAGGCAGGAATCCAAAACCTTCATACCTCTGGTATGGGAACGAGATCACTAGAAAAATACTCTTCTTCCTTTCCCAGGGAAAGCTTCT