VISDB Viral Integration Site DataBase

VIS ID

TVIS30014638

Fusion event

HIV-ZC3H11A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

203771696/203802754 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-27b-3p ; hsa-mir-129-5p ; hsa-mir-503-3p ; hsa-mir-1238-5p ; hsa-mir-4460 ; hsa-mir-4481 ; hsa-mir-4536-5p ; hsa-mir-4727-3p ; hsa-mir-4745-5p ; hsa-mir-4758-5p ; hsa-mir-6504-3p ; hsa-mir-185-5p ; hsa-mir-4306 ; hsa-mir-4644 ; hsa-mir-5192 ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-144-3p ; hsa-mir-137 ; hsa-mir-3591-5p ; hsa-mir-6857-3p ; hsa-mir-4494 ; hsa-mir-140-5p ; hsa-mir-6718-5p ; hsa-mir-203b-5p ; hsa-mir-4499 ; hsa-mir-5010-3p ; hsa-mir-2113 ; hsa-mir-4752 ; hsa-mir-6833-5p ; hsa-mir-4753-3p ; hsa-mir-7847-3p ; hsa-mir-6770-5p ; hsa-mir-130b-5p ; hsa-mir-425-5p ; hsa-mir-3154

Nearest miRNA

hsa-mir-101-1/Upstream/1799518; hsa-mir-1182/Downstream/1645548;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/6589, chr1-CpG: 28/Downstream/58625

Upstream sequence

TGGAAGATGGAGTTTTTTTTCATGATCCTTTAACTCTCAAGTTCATCTTTAAATGAACTCtttttttttgttttttttttgttttgttttgttttgtttt

Downstream sequence

tgAGGAGATAACTAACCCTAGCTGTCTCCAGTCTGACAAAGGTTATTTGAATGGACTTAATCTCCCAGTAGTTGGGAGATGTTTTAAAAACACATGCTGT

Target sequence

GTGAAGAAATCTTGAAGACCAGAAATTGGATCTTACTGAAAAACTGATGtttttttgttttttttttaaattatattGTTCAGCTATGGAAGATGGAGTTTTTTTTCATGATCCTTTAACTCTCAAGTTCATCTTTAAATGAACTCtttttttttgttttttttttgttttgttttgttttgtttt