VISDB Viral Integration Site DataBase

VIS ID

TVIS30014644

Fusion event

HIV-FLVCR1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr1

Cytoband

q32.3

Reference genome

Start

End

213044470/212871023 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-6867-5p ; hsa-mir-513a-3p ; hsa-mir-513c-3p ; hsa-mir-3606-3p ; hsa-mir-4803 ; hsa-mir-142-3p ; hsa-mir-302c-5p ; hsa-mir-567 ; hsa-mir-1262 ; hsa-mir-4296 ; hsa-mir-4322 ; hsa-mir-4265 ; hsa-mir-4701-3p ; hsa-mir-4781-3p ; hsa-mir-6736-5p ; hsa-mir-6748-5p ; hsa-mir-6759-5p ; hsa-mir-6796-5p ; hsa-mir-6869-5p ; hsa-mir-217 ; hsa-mir-4666b ; hsa-mir-6807-3p ; hsa-mir-8055 ; hsa-mir-548n ; hsa-mir-3613-5p ; hsa-mir-6793-5p ; hsa-mir-3121-5p ; hsa-mir-888-5p ; hsa-mir-3672 ; hsa-mir-6864-3p ; hsa-mir-4524a-3p ; hsa-mir-8081 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-3143 ; hsa-mir-924 ; hsa-mir-4766-5p ; hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-297 ; hsa-mir-3924 ; hsa-mir-411-5p ; hsa-mir-223-5p ; hsa-mir-4439 ; hsa-mir-943 ; hsa-mir-3136-5p ; hsa-mir-3152-3p ; hsa-mir-5002-3p ; hsa-mir-3651 ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3653-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-3157-5p ; hsa-mir-640 ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-3137 ; hsa-mir-6880-3p ; hsa-mir-4485-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-4742-5p ; hsa-mir-6877-3p ; hsa-mir-6819-3p ; hsa-mir-1183 ; hsa-mir-1273f ; hsa-mir-193b-5p ; hsa-mir-3170 ; hsa-mir-6832-5p ; hsa-mir-6855-5p ; hsa-mir-6890-5p

Nearest miRNA

hsa-mir-101-1/Upstream/793338; hsa-mir-1182/Downstream/7246830;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/12246, chr1-CpG: 103/Downstream/79282

Upstream sequence

atgcctggctaatttttgtaattttttgtagagacggggtttcaccatgttggccaggctggtctcgaactcctgacctcacatgatccacctgcctcgg

Downstream sequence

aatctctgaaatcaagatgcctttaataatcagtggcatctaacatttgtggtaattgagatatggttatgtgaaaaccttctattgatacctggcaaga

Target sequence

cctcccaaagtgctgggattacaggtgtgagccactgtgccgggcTTCTTTTTTCTTTTTGAATTTAccctgtttcatcaatcttgaggtatacctttttcatga