VISDB Viral Integration Site DataBase

VIS ID

TVIS30014667

Fusion event

HIV-DHTKD1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p14

Reference genome

Start

End

12164176/12122241 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-1296-5p ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-129-5p ; hsa-mir-1228-5p ; hsa-mir-6881-5p ; hsa-mir-6787-5p ; hsa-mir-663a ; hsa-mir-1908-5p ; hsa-mir-7150 ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-1207-5p ; hsa-mir-4695-3p ; hsa-mir-4772-3p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6736-3p ; hsa-mir-6890-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-138-2-3p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-6878-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-212-5p ; hsa-mir-186-3p ; hsa-mir-6849-3p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-1226-3p ; hsa-mir-5585-3p ; hsa-mir-6783-3p ; hsa-mir-4279 ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-1976 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-660-3p ; hsa-mir-3934-5p ; hsa-mir-5586-5p ; hsa-mir-6512-3p ; hsa-mir-6720-5p ; hsa-mir-6746-3p

Nearest miRNA

hsa-mir-3155a/Upstream/5969964; hsa-mir-107/Downstream/8519;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/52941, chr10-CpG: 101/Downstream/6985

Upstream sequence

TTATAATGAAATTGATTTGTAGTCTGTTTTGCCGTAAACTTGTTTTTCTTTAAATTGTTCTTACAGTGATATCTTACTATTTTTAACTGTCTGGGGTTTC

Downstream sequence

TGATATGGGGATTTCAGCCCCTGGTTAATCAGTCTTGTCCCTACAAGTCCCTGATGCAGTATGTTTATTTGTGATGTTTAAAGAACATTTCTTggctggg

Target sequence

AACTTGTTTTTCTTTAAATTGTTCTTACAGTGATATCTTACTATTTTTAACTGTCTGGGGTTTC