VISDB Viral Integration Site DataBase

VIS ID

TVIS30014669

Fusion event

HIV-FAM107B integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p13

Reference genome

Start

End

14803505/14761842 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-615-3p ; hsa-mir-3942-3p ; hsa-mir-759 ; hsa-mir-5197-3p ; hsa-mir-6882-5p ; hsa-mir-6507-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-335-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-6507-5p ; hsa-mir-8485 ; hsa-mir-1183 ; hsa-mir-3607-3p ; hsa-mir-4311

Nearest miRNA

hsa-mir-1265/Upstream/325181; hsa-mir-107/Downstream/3083265;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/157136, chr10-CpG: 125/Downstream/75928

Upstream sequence

gtgctccaccacacctggctaatttttgtatttttagtagaggggggggtttcaccatgttggccaggctggtcttgaactcctggcctcaagtgatccg

Downstream sequence

cccacctcagcttcccaatgtgctgagattacaggcatccgccaccgcaccgggccGATGGCTCATTTTTTAACACATTGAGTTTGAGATCGCTGTGAGG

Target sequence

gcatagtatttagtttgagtaagattttctgggttttgccactgaaagcatgctaatgatacaAGGAGGAAGTTTAGGAAGGGAGATAGCTCttttttcttttttttctttttgcgacagtctcggtctgtcacccaggctggagtgcagtggtgcgatctcagctcactgcaacctccacctcccagattcaagcgattctcccaccttcctctcaagtagctgggagcacagatgtgctccaccacacctggc