Basic Information
VIS ID
TVIS30014672
Fusion event
HIV-ST8SIA6 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p12.33
Reference genome
GRCh37/hg19
Start
17463293/17421294 (Hg38)
End
17463365/17421294 (Hg38)
Orient
+
Location type
Intronic
Target gene
ST8SIA6
Nearest miRNA
hsa-mir-1265/Upstream/2984633; hsa-mir-107/Downstream/423813;
Nearest TSS
ENST00000439456/Upstream/13267; ENST00000486183/Downstream/33036;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/190676, chr10-CpG: 103/Downstream/32114
Upstream sequence
gaacacaactgggaaaggccatgccagcctcaagccccctgtggaactggctgagtcctctgttgcaactgcattaggatctatctgtcttctcctgctg
Downstream sequence
atcccagagtgtgttgcccaggaaatccaatttacagcaGTCCGTAATACAAAAGAAATTGTATAGTATGTAGTTTAATTGACCTGTGCTTCTAACAGGC
Target sequence
cttagtcctgtttccctcatgggcattgttcctgagagcacttcctaataagtgtcctatatacaaatctgt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate