VISDB Viral Integration Site DataBase

VIS ID

TVIS30014677

Fusion event

HIV-YME1L1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

p12.1

Reference genome

Start

End

27428536/27139759 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-331-3p ; hsa-mir-374a-5p ; hsa-mir-5698 ; hsa-mir-143-5p ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-6499-3p ; hsa-mir-4679 ; hsa-mir-1914-5p ; hsa-mir-5693 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-342-3p ; hsa-mir-1228-3p ; hsa-mir-500a-5p ; hsa-mir-200a-3p ; hsa-mir-141-3p ; hsa-mir-3178 ; hsa-mir-6499-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-6131 ; hsa-mir-4755-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3663-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-4430 ; hsa-mir-3652 ; hsa-mir-3135b ; hsa-mir-3664-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-6780a-5p ; hsa-mir-450a-1-3p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-3165 ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6799-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-6804-5p ; hsa-mir-6089 ; hsa-mir-151b ; hsa-mir-151a-5p ; hsa-mir-383-3p ; hsa-mir-4779

Nearest miRNA

hsa-mir-1265/Upstream/2863978; hsa-mir-107/Downstream/1149499;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/39066, chr10-CpG: 30/Downstream/14342

Upstream sequence

TTCATGGTTATTAtcctatctcttcttgggttaactttgttaattaattgcttagacaattgtccatttcaacatatttttatttttgacataaagttac

Downstream sequence

acatactaccttgcaattttaaaaccttcacatatccatggcaattcccactcatacttctaatactgtctgtattttcctgttgtttcttaatcagaat

Target sequence

CTAGTGCCTCTGGGGCAAAGGGACAATATTTTTAAAATACTGTCTTTTAAACTTCATGGTTATTAtcctatctcttcttgggttaactttgttaattaattgcttagacaattgtccatttcaacatatttttatttttgacataaagttac