Basic Information
VIS ID
TVIS30014680
Fusion event
HIV-chr10 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
38208064/37919136 (Hg38)
End
38208258/37919136 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/2277884; hsa-mir-107/Downstream/5078427;
Nearest TSS
ENST00000439456/Upstream/61030; ENST00000412789/Downstream/57456;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/60960, chr10-CpG: 56/Downstream/57011
Nearby gene
ZNF25(No orient, 30730)
Upstream sequence
gacacaccaaaaaacccacacctaggcctatcatattcaaactacagaaaattctaagataaagagaaagcactgaaagaagccagtgggggtgggggtg
Downstream sequence
gattgtcattagtagacctatcttgtaaaagaagctcttccaggagaaggaacatggtatggggttgaaactcagatatacataaaggaagagagttaga
Target sequence
gtaacaacttacccatagaaaagtaaggataataattacattgtaatttgcttcaaaaactattcaagcagaagagagtggagtgaaatatttaaaagggcgaaagaaaaccagtctagaattctgtatccagtgaaattatcttttactggtgaaggtgaaataaagactctcaaataaacaaaattgaagga
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate