Basic Information
VIS ID
TVIS30014681
Fusion event
HIV-chr10 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
42365628/41874579 (Hg38)
End
42365608/41874579 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/6233327; hsa-mir-107/Downstream/1122984;
Nearest TSS
ENST00000439456/Upstream/3421398; ENST00000442306/Downstream/310760;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/2931473, chr10-CpG: 184/Downstream/236454
Nearby gene
LOC441666(No orient, 461685)
Upstream sequence
cattccattaaattccattgcattccagttcattccattcctttccattccattccattcccttccattccattccgttgcattgcaatcgggttgattc
Downstream sequence
caatccattccattacatcccagtccttttcattgaattatattccactcggtttgtttccattacactgaattccattccattccattccattccattg
Target sequence
cattgcaatcgggttgattc
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate