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TVIS30014683
Basic Information
VIS ID
TVIS30014683
Fusion event
HIV-MAPK8 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr10
Cytoband
q11.22
Reference genome
GRCh37/hg19
Start
49615286/48407243 (Hg38)
End
49615508/48407243 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA10G
Target gene
MAPK8
miRNAs that regulate target gene
hsa-mir-199a-3p
;
hsa-mir-214-3p
;
hsa-mir-421
;
hsa-mir-193b-3p
;
hsa-mir-125a-5p
;
hsa-mir-140-3p
;
hsa-mir-10a-5p
;
hsa-mir-33a-5p
;
hsa-mir-877-5p
;
hsa-mir-92a-3p
;
hsa-mir-3163
;
hsa-mir-4480
;
hsa-mir-1277-5p
;
hsa-mir-3662
;
hsa-mir-374b-3p
;
hsa-mir-548s
;
hsa-mir-4524b-5p
;
hsa-mir-4524a-5p
;
hsa-mir-3926
;
hsa-mir-3190-5p
;
hsa-mir-4280
;
hsa-mir-892b
;
hsa-mir-193a-3p
;
hsa-mir-497-3p
;
hsa-mir-30b-5p
;
hsa-mir-30e-5p
;
hsa-mir-30c-5p
;
hsa-mir-30d-5p
;
hsa-mir-30a-5p
;
hsa-mir-3680-3p
;
hsa-mir-433-3p
;
hsa-mir-7154-5p
;
hsa-mir-4795-3p
;
hsa-mir-8060
;
hsa-mir-496
;
hsa-mir-664a-3p
;
hsa-mir-126-5p
;
hsa-mir-203a-3p
;
hsa-mir-33b-5p
;
hsa-mir-557
;
hsa-mir-507
;
hsa-mir-450b-5p
;
hsa-mir-4325
;
hsa-mir-7703
;
hsa-mir-4775
;
hsa-mir-616-5p
;
hsa-mir-373-5p
;
hsa-mir-371b-5p
;
hsa-mir-3613-3p
;
hsa-mir-888-5p
;
hsa-mir-590-3p
;
hsa-mir-548aw
;
hsa-mir-1468-3p
;
hsa-mir-548x-5p
;
hsa-mir-548g-5p
;
hsa-mir-548f-5p
;
hsa-mir-548aj-5p
;
hsa-mir-4282
Nearest miRNA
hsa-mir-1265/Upstream/3243155; hsa-mir-107/Downstream/578269;
Nearest TSS
ENST00000439456/Upstream/5582;
ENST00000482840/Downstream/17276;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/99886
,
chr10-CpG: 86/Downstream/42938
Upstream sequence
TTCTGACTTTTCACTTGTGGGCTTCACTTCCCAGTTTTGCTCAGGATATCTTTGTAATAGCTGgattaattcattagcaacttttgagcatattgcagaa
Downstream sequence
cttcttttgaagtagttatataccactactaatcattgacttttgcttggctgtccagtctataactgatataatttcctttatttccctttttgaaaaa
Target sequence
attacgtgtctaactatcacagttatccagctgtttccaattcatcatcttattcacatggatgttattattagaaacattttgtaaaatgccattttgaaatcttcatatactgtgtctggttgcatttttctgatttattgctattgttctttgttgtttttattcatggaaggaaatagtatttctcaatgaacttttacctgctcttggtaattgtta
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Sample Information
×
Sample name
PT4
Sample type
PBMC
Age
39
Gender
Male
CpG Island Information
×
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