VISDB Viral Integration Site DataBase

VIS ID

TVIS30014688

Fusion event

HIV-JMJD1C integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q21.3

Reference genome

Start

End

65018856/63258907 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-326 ; hsa-let-7e-5p ; hsa-mir-374a-5p ; hsa-mir-718 ; hsa-mir-587 ; hsa-mir-6084 ; hsa-mir-5581-5p ; hsa-mir-4297 ; hsa-mir-145-3p ; hsa-mir-6880-3p ; hsa-mir-4485-5p ; hsa-mir-2681-5p ; hsa-mir-5579-3p ; hsa-mir-889-3p ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-590-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-548n ; hsa-mir-23c ; hsa-mir-130a-5p ; hsa-mir-23a-3p ; hsa-mir-23b-3p ; hsa-mir-8081 ; hsa-mir-627-5p ; hsa-mir-937-5p ; hsa-mir-627-3p ; hsa-mir-205-5p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-6875-3p ; hsa-mir-670-3p ; hsa-mir-4762-5p ; hsa-mir-513b-3p ; hsa-mir-3662

Nearest miRNA

hsa-mir-1265/Upstream/5954348; hsa-mir-107/Downstream/114050;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/125331, chr10-CpG: 122/Downstream/206203

Upstream sequence

AGATCATTACTTACAAGACTTTTATCAACTTTAAAAAATCATTAAACAACTAGCAGGGAGCCGTGAAATTGGTAAAAAGTAATGCTAGAGCAGTGACATG

Downstream sequence

CTCCACCATACAAAGCACTGTAACAGGAAGTTCTGTTTACTTCTTTCTGTAAACTACTAGTAATATCATATTACCCTGAGAAATAAATCTGCTTATAAAC

Target sequence

ATACCACGAAAATGACAAATCTGAAAGGAACTGTAGGACAAAAATAATTACGGAAGTATACTAATAAATACTGTACCAGGTCAAATTCTCATTCACACTATAGAAATGTTACATTTTTAAAACAATCTAAAGTGATCTGTCTGTACTATAAGCTGAAGTGAAGGTAAAGTTTGAAAAAGCAAGTCCCTT