VISDB Viral Integration Site DataBase

VIS ID

TVIS30014710

Fusion event

HIV-GSTO1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q25.1

Reference genome

Start

End

106016013/104256464 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-197-3p ; hsa-mir-1275 ; hsa-mir-193b-5p ; hsa-mir-30a-3p ; hsa-mir-30d-3p ; hsa-mir-30e-3p ; hsa-mir-4260 ; hsa-mir-4291 ; hsa-mir-4310 ; hsa-mir-450a-2-3p ; hsa-mir-4665-5p ; hsa-mir-5572 ; hsa-mir-6503-3p ; hsa-mir-6751-5p ; hsa-mir-6752-5p ; hsa-mir-6803-5p ; hsa-mir-6835-5p ; hsa-mir-6842-5p ; hsa-mir-7109-5p ; hsa-mir-7110-5p ; hsa-mir-7157-5p

Nearest miRNA

hsa-mir-107/Upstream/37581; hsa-mir-202/Downstream/11872;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/1135, chr10-CpG: 49/Downstream/12302

Upstream sequence

TGAAAAGTCCAGGAGCATGACACAGCTGGATTCAGAGGCACAAAGTCCTGGGTTATGTGCTTCACCCTGGACCTTTAGTTTGAAAACAACCCTACCTTAT

Downstream sequence

TTACTGGGGCAGTTTTCCAAAGGAACATTGAAACTATCTTCCCCTAATAGTGTGGGGTAGAGGGGAGGAAGAGAGTGGTTAACAGCTTCCAGACAGTGCA

Target sequence

GTTTCTCAAAAACACTGTCATATTTGCTGTGATAGAACTCTTTTATTGTACTAAGAGAAATCTAATGTAACCAAAATTGAAAAAAGACATTTTTTGGTACTCATTTATTTGAAAAGTCCAGGAGCATGACACAGCTGGATTCAGAGGCACAAAGTCCTGGGTTATGTGCTTCACCCTGGACCTTTAGTTTGAAAACAACCCTACCTTAT