VISDB Viral Integration Site DataBase

VIS ID

TVIS30014712

Fusion event

HIV-SHOC2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr10

Cytoband

q25.2

Reference genome

Start

End

112731450/110971301 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-335-5p ; hsa-mir-103a-3p ; hsa-mir-26b-5p ; hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106a-5p ; hsa-mir-106b-5p ; hsa-mir-299-3p ; hsa-mir-20b-5p ; hsa-mir-491-5p ; hsa-mir-519c-3p ; hsa-mir-526b-3p ; hsa-mir-519b-3p ; hsa-mir-519d-3p ; hsa-mir-519a-3p ; hsa-mir-575 ; hsa-mir-1825 ; hsa-mir-2110 ; hsa-mir-548t-5p ; hsa-mir-3189-5p ; hsa-mir-4668-5p ; hsa-mir-4676-5p ; hsa-mir-371b-3p ; hsa-mir-4758-3p ; hsa-mir-4786-3p ; hsa-mir-5699-5p ; hsa-mir-6124 ; hsa-mir-548az-5p ; hsa-mir-6796-5p ; hsa-let-7a-3p ; hsa-let-7b-3p ; hsa-let-7f-1-3p ; hsa-mir-15a-5p ; hsa-mir-98-3p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-379-3p ; hsa-mir-380-3p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-411-3p ; hsa-mir-1245a ; hsa-mir-3942-5p ; hsa-mir-4495 ; hsa-mir-4703-5p ; hsa-mir-6838-5p ; hsa-mir-8062 ; hsa-mir-8079 ; hsa-mir-5000-5p ; hsa-mir-216a-3p ; hsa-mir-218-5p ; hsa-mir-128-3p ; hsa-mir-4302 ; hsa-mir-4291 ; hsa-mir-3611 ; hsa-mir-3681-3p ; hsa-mir-7843-3p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-138-2-3p ; hsa-mir-5197-5p ; hsa-mir-219a-2-3p ; hsa-mir-4539 ; hsa-mir-219b-3p ; hsa-mir-4680-3p ; hsa-mir-203b-3p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-429 ; hsa-mir-4639-5p ; hsa-mir-488-5p ; hsa-mir-1245b-3p ; hsa-mir-5586-5p ; hsa-mir-1264 ; hsa-mir-1185-2-3p ; hsa-mir-1185-1-3p ; hsa-let-7f-2-3p ; hsa-mir-4789-5p ; hsa-mir-4666a-3p ; hsa-mir-381-3p ; hsa-mir-300 ; hsa-mir-8485 ; hsa-mir-4731-3p ; hsa-mir-4801 ; hsa-mir-944 ; hsa-mir-6742-5p ; hsa-mir-4472 ; hsa-mir-4447 ; hsa-mir-3151-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-3619-5p ; hsa-mir-761 ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-636 ; hsa-mir-4699-5p ; hsa-mir-3120-3p ; hsa-mir-127-5p ; hsa-mir-548au-3p ; hsa-mir-494-3p ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-4519 ; hsa-mir-548e-5p ; hsa-mir-3942-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-342-3p ; hsa-mir-383-3p ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-1228-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4284 ; hsa-mir-665 ; hsa-mir-633 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-3664-3p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-2114-5p ; hsa-mir-5588-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4695-5p ; hsa-mir-510-5p ; hsa-mir-512-5p ; hsa-mir-4803 ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-1262 ; hsa-mir-1273g-3p ; hsa-mir-3160-3p ; hsa-mir-3664-5p ; hsa-mir-4252 ; hsa-mir-4487 ; hsa-mir-4522 ; hsa-mir-4701-3p ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-542-3p ; hsa-mir-558 ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6776-5p ; hsa-mir-6849-3p ; hsa-mir-766-3p ; hsa-mir-7703

Nearest miRNA

hsa-mir-107/Upstream/73146; hsa-mir-202/Downstream/17625;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/51165, chr10-CpG: 317/Downstream/104931

Upstream sequence

aattcattctgagttagttttttgtatatagtgagagataggggtctagtttcattcttctgcatatatatatatccagctttctcagtaccatttcttg

Downstream sequence

cattttttggtccctttgaatttctttcattgttttacagttttcatcatagagctttttcacctccttaaatttaCATTTAAGAATCAGCATTTTAAAA

Target sequence

aagggtctgtcctttcttcaatgtatattgttggctcctttatcaagtatcagttggctgtaaatatgtggatttatttctgggttctctactctattcaattgatctattgtcttgtttttatgccagtactgtgcattttggttactctaactttgtgtatactttgaggtcaggtagtgtgatgcctccaattttgtcctttttgcccagtattgctttggctatttagagtcttctatggttccacatgaa