Basic Information
VIS ID
TVIS30014730
Fusion event
HIV-STIM1 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
p15.4
Reference genome
End
4081971/4060861 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-210/Upstream/204720; hsa-let-7a-2/Downstream/3173905;
Upstream sequence
caacaaatatagtaaagtgtcaacaaatatagtaagtgttatagctattatgtaagtctttccagagttcaactgggggcacaaactagggaggagtttc
Downstream sequence
ctattggagtccagggaaactttatggagaaagtaattcttgagctgagtcttaaaagatgagaagTGGCCTTATTAAACTCTCCCTATGTTAACAGCTT
Target sequence
ctaaatggagatagctatgtcaacaaatatagtaaagtgtcaacaaatatagtaagtgttatagctattatgtaagtctttccagagttcaactgggggcacaaactagggaggagtttc
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate