VISDB Viral Integration Site DataBase

VIS ID

TVIS30014772

Fusion event

HIV-CAPN1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.1

Reference genome

Start

End

64960679/65193372 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-34a-5p ; hsa-mir-140-5p ; hsa-mir-487a-5p ; hsa-mir-487b-5p ; hsa-mir-1205 ; hsa-mir-4460 ; hsa-mir-203b-5p ; hsa-mir-6718-5p ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6809-5p ; hsa-mir-4708-3p ; hsa-mir-17-3p ; hsa-mir-1184 ; hsa-mir-3158-5p ; hsa-mir-4742-5p ; hsa-mir-1249-5p ; hsa-mir-1321 ; hsa-mir-1343-5p ; hsa-mir-140-3p ; hsa-mir-149-3p ; hsa-mir-151a-5p ; hsa-mir-151b ; hsa-mir-3173-3p ; hsa-mir-3177-3p ; hsa-mir-3188 ; hsa-mir-4419a ; hsa-mir-4445-3p ; hsa-mir-4493 ; hsa-mir-4510 ; hsa-mir-4728-5p ; hsa-mir-4739 ; hsa-mir-4747-5p ; hsa-mir-4756-5p ; hsa-mir-4779 ; hsa-mir-5196-5p ; hsa-mir-548al ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6785-5p ; hsa-mir-6797-5p ; hsa-mir-6883-5p ; hsa-mir-6891-5p ; hsa-mir-7150 ; hsa-mir-939-5p ; hsa-mir-9500

Nearest miRNA

hsa-mir-10392/Upstream/63394; hsa-let-7a-2/Downstream/251086;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/8808, chr11-CpG: 26/Downstream/11342

Upstream sequence

ccagccccctcttaatatactcttatgtctcgtgtataataatgtcccctttttatgcatgggattgctcatttgcattgtctcttttgtctttattaat

Downstream sequence

cctgcaagaagtttgtcaatataaatctttacaaataaatgacttttggccagctgcactcaggagatcgagaccatcctggccaacacagtgaaacccc

Target sequence

gaccttgtgatcctcctgcctcggcctcccaaagtgctgggattacaggcgtgagccactgcacccagccccctcttaatatactcttatgtctcgtgtataataatgtcccctttttatgcatgggattgctcatttgcattgtctcttttgtctttattaat