VISDB Viral Integration Site DataBase

VIS ID

TVIS30014813

Fusion event

HIV-FCHSD2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q13.4

Reference genome

Start

End

72847700/73136821 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-7159-3p ; hsa-mir-4668-5p ; hsa-mir-210-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-4272 ; hsa-mir-3613-3p ; hsa-mir-6074 ; hsa-mir-3622a-5p ; hsa-mir-548an ; hsa-mir-4482-3p ; hsa-mir-4474-5p ; hsa-mir-4662a-5p ; hsa-mir-6791-3p ; hsa-mir-6829-3p ; hsa-mir-449b-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p

Nearest miRNA

hsa-mir-10392/Upstream/353229; hsa-let-7a-2/Downstream/1262416;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/314092, chr11-CpG: 192/Downstream/4310

Upstream sequence

TTAATTCATATAAAAACCCAAGTTCGggccaggcgcagtggctcatgcctgtaatcctagcactttgggaggccgaggcgggtggatcacttgaggtcag

Downstream sequence

gagttcaaaagcagcctggccaacatggtgaaacccagtctctactaacaatacaaaaaaattagccgggcgtggtggcaggtgtggtggcagctactag

Target sequence

CAGGGGGCACTGGTGAGAAGGAGCACTAGTCTCAAAAGAGGAAAAGCAAGTAAGATCCTTTACAACTTAATTCATATAAAAACCCAAGTTCGggccaggcgcagtggctcatgcctgtaatcctagcactttgggaggccgaggcgggtggatcacttgaggtcag