VISDB Viral Integration Site DataBase

VIS ID

TVIS30014823

Fusion event

HIV-CHORDC1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q14.3

Reference genome

Start

End

89951183/90217962 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-26b-5p ; hsa-mir-485-5p ; hsa-mir-6884-5p ; hsa-mir-8065 ; hsa-mir-574-5p ; hsa-mir-3924 ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-567 ; hsa-mir-222-3p ; hsa-mir-221-3p ; hsa-mir-511-3p ; hsa-mir-5580-3p ; hsa-mir-6079 ; hsa-mir-6828-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4781-3p ; hsa-mir-9500 ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-4524b-3p ; hsa-mir-144-3p ; hsa-mir-5584-3p ; hsa-mir-6875-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-361-5p ; hsa-mir-6832-3p ; hsa-mir-1324 ; hsa-mir-2115-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-34b-3p ; hsa-mir-605-5p ; hsa-mir-568 ; hsa-mir-551b-5p ; hsa-mir-4775 ; hsa-mir-186-3p ; hsa-mir-3938 ; hsa-mir-32-3p ; hsa-mir-26a-5p

Nearest miRNA

hsa-mir-10392/Upstream/2041369; hsa-let-7a-2/Downstream/337812;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/164174, chr11-CpG: 65/Downstream/4612

Upstream sequence

ctccacctgggcaacacagtgaaactccatctcaaaaaaaaaaaaaaaaaCCCAGAAttaaaatacaattttataactggaaaagaccttaagatcatca

Downstream sequence

GCAAAGGTCATTAAGAAGAAAGTCACTAGCTGAGAAAAAAAGATGAGAAAATAAAGATTTAGTATTACATCTCTCAATTTACTACACAGATATGAAAAAA

Target sequence

tctactgtcttttctttgtctttagtggagtatacgcttaaagcacctcCCCC