Basic Information
VIS ID
TVIS30014833
Fusion event
HIV-chr11 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
97681102/97810102 (Hg38)
End
97680837/97810102 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/1468576; hsa-let-7a-2/Downstream/3709718;
Nearest TSS
ENST00000527297/Upstream/550115; ENST00000532109/Downstream/132660;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1419679, chr11-CpG: 34/Downstream/1210711
Nearby gene
CNTN5(No orient, 1210768)
Upstream sequence
tcaataactgttgtttaaaccactagtcaatggtattttgtgatggaagcccaagctgactgatacaGGGCCATTATttcaggaaagatctctaggtatt
Downstream sequence
gttgtggcttctctgagaatccagatgtaactgacaccccctccatccagagttcttttactaaaaagcatagcttcttcattcttgtgtcataagcttc
Target sequence
gtgcccttgtgaagagacaaagagacagagtgctctcttcatctgttataaaagaacacaataaaaacacagctgtcttcaagccaggaaaacagtttttgtcaaggaatggaattagccagtaaccttgatcttggacttcccagctttcagaactgtgagaaatcaataactgttgtttaaaccactagtcaatggtattttgtgatggaagcccaagctgactgatacaGGGCCATTATttcaggaaagatc
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate