Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene104751932104704275104707886104694122104695343104669000104669600104700577104700902104688810104689033104709218104709237104710466
Basic Information
VIS ID
TVIS30014834
Fusion event
HIV-chr11 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
104581194/104710466 (Hg38)
End
104581029/104710466 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/860486; hsa-let-7a-2/Downstream/6637291;
Nearest TSS
ENST00000527297/Upstream/101145; ENST00000527177/Downstream/236726;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/546136, chr11-CpG: 31/Downstream/899933
Nearby gene
CASP12(No orient, 175250)
Upstream sequence
CTGGCTGAAGTTAACTCCTGGTACCTAGTCTcctgtattcattaacagacactccttatttccttctacattccccagctataggcaatattaatgtgtt
Downstream sequence
ttctatctccataaattgtctattctatacattttatattaatggaatcacacaacagcgatttttgtgataacattctttcacttggtataatgttttt
Target sequence
GTTTTATTTTTTGGGAACCACCTTTCCCCTATTCTCAGCCTTGTGGTCTGTGAAATTACACTTGACTGGCTGAAGTTAACTCCTGGTACCTAGTCTcctgtattcattaacagacactccttatttccttctacattccccagctataggcaatattaatgtgtt
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate