Basic Information
VIS ID
TVIS30014882
Fusion event
HIV-LOC105369612 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
4295561/4186395 (Hg38)
End
4295379/4186395 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369612
Nearest miRNA
hsa-mir-3649/Upstream/2526015; hsa-let-7i/Downstream/2777304;
Nearest TSS
ENST00000382841/Upstream/160410; ENST00000541542/Downstream/87377;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/21070, chr12-CpG: 38/Downstream/57361
Nearby gene
CCND2(No orient, 87340)
Upstream sequence
gatttaagtatatgtgagaattttgcacattcaataaataatgttggttcaactggatatccatatgaagaaacaataaaggtgatccctactttacaac
Downstream sequence
tagtgctgaagtagattgtgatagacaaaagatttaaatgaaatcataaaattacgagaaaacatgagaagagtttataactcatgtgagagaaagtatg
Target sequence
atcaaaacctattatatgtcctcaataagaaaaacaatgtgagtagaaagaccactaaaatcaaatagaaaattcacaaatagatttaagtatatgtgagaattttgcacattcaataaataatgttggttcaactggatatccatatgaagaaacaataaaggtgatccctactttacaac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate