VISDB Viral Integration Site DataBase

VIS ID

TVIS30014883

Fusion event

HIV-MLF2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.31

Reference genome

Start

End

6858272/6749222 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-744-5p ; hsa-mir-296-3p ; hsa-mir-92a-3p ; hsa-mir-16-5p ; hsa-mir-3679-3p ; hsa-mir-6826-3p ; hsa-mir-4662a-5p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-6507-3p ; hsa-mir-4282 ; hsa-mir-1207-5p ; hsa-mir-122-5p ; hsa-mir-1249-5p ; hsa-mir-1252-5p ; hsa-mir-1258 ; hsa-mir-1265 ; hsa-mir-185-5p ; hsa-mir-186-5p ; hsa-mir-1914-3p ; hsa-mir-193b-5p ; hsa-mir-2392 ; hsa-mir-3133 ; hsa-mir-3153 ; hsa-mir-3184-5p ; hsa-mir-3914 ; hsa-mir-423-5p ; hsa-mir-4265 ; hsa-mir-4296 ; hsa-mir-4306 ; hsa-mir-4322 ; hsa-mir-4417 ; hsa-mir-4419a ; hsa-mir-4426 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4510 ; hsa-mir-4534 ; hsa-mir-4644 ; hsa-mir-4647 ; hsa-mir-4662b ; hsa-mir-4668-5p ; hsa-mir-4699-5p ; hsa-mir-4709-3p ; hsa-mir-4710 ; hsa-mir-4722-5p ; hsa-mir-4736 ; hsa-mir-4763-3p ; hsa-mir-4768-3p ; hsa-mir-4779 ; hsa-mir-497-3p ; hsa-mir-504-3p ; hsa-mir-5194 ; hsa-mir-548m ; hsa-mir-5584-5p ; hsa-mir-5681a ; hsa-mir-6124 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-651-3p ; hsa-mir-6514-5p ; hsa-mir-665 ; hsa-mir-6721-5p ; hsa-mir-6730-5p ; hsa-mir-6731-5p ; hsa-mir-6732-5p ; hsa-mir-6733-5p ; hsa-mir-6734-5p ; hsa-mir-6738-5p ; hsa-mir-6739-5p ; hsa-mir-6750-5p ; hsa-mir-6760-5p ; hsa-mir-6774-5p ; hsa-mir-6797-5p ; hsa-mir-6822-5p ; hsa-mir-6888-5p ; hsa-mir-7150 ; hsa-mir-765 ; hsa-mir-8082 ; hsa-mir-8085 ; hsa-mir-9500 ; hsa-mir-199a-3p ; hsa-mir-199b-3p ; hsa-mir-222-5p ; hsa-mir-2467-3p ; hsa-mir-3129-5p ; hsa-mir-3678-3p ; hsa-mir-548c-3p ; hsa-mir-551b-5p ; hsa-mir-936

Nearest miRNA

hsa-mir-3649/Upstream/5088842; hsa-let-7i/Downstream/214477;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/131, chr12-CpG: 56/Downstream/3433

Upstream sequence

GCTCTTTTGGTTTCTGCACGGTCCCAGGAAGCCACCGGTAGGCGTAAGGTGGCCTACTGGAGGAAGAAATCAGAATGGGATTATTCTTCAGTTCAGGTTC

Downstream sequence

ACAGTCCTATGTGCACACTAGGTACTTAATAATTGCGGATTTGAAAAAGATAAAGAGGGGAGAAAGAAACGGATCAAGGTGGAGAAGGGTGTAACACTAT

Target sequence

GGTGGCAATTCCCTTAGCTCTTTTGGTTTCTGCACGGTCCCAGGAAGCCACCGGTAGGCGTAAGGTGGCCTACTGGAGGAAGAAATCAGAATGGGATTATTCTTCAGTTCAGGTTC