VISDB Viral Integration Site DataBase

VIS ID

TVIS30014887

Fusion event

HIV-CLEC2D integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.31

Reference genome

Start

End

9845378/9692590 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-2681-5p ; hsa-mir-4477a ; hsa-mir-4682 ; hsa-mir-6767-3p ; hsa-mir-205-3p ; hsa-mir-429 ; hsa-mir-200c-3p ; hsa-mir-200b-3p ; hsa-mir-4455 ; hsa-mir-6083 ; hsa-mir-1277-5p ; hsa-mir-297 ; hsa-mir-3924 ; hsa-mir-567 ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-410-3p ; hsa-mir-8066 ; hsa-mir-6867-5p ; hsa-mir-3688-3p ; hsa-mir-5680 ; hsa-mir-4662b ; hsa-mir-4426 ; hsa-mir-4647 ; hsa-mir-3646 ; hsa-mir-6838-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-5003-3p ; hsa-mir-587 ; hsa-mir-6818-3p ; hsa-mir-5581-3p ; hsa-mir-4286 ; hsa-mir-4716-5p ; hsa-mir-1252-3p ; hsa-mir-1910-3p ; hsa-mir-214-3p ; hsa-mir-3617-3p ; hsa-mir-3619-5p ; hsa-mir-3714 ; hsa-mir-4291 ; hsa-mir-577 ; hsa-mir-6511a-5p ; hsa-mir-761 ; hsa-mir-922

Nearest miRNA

hsa-mir-1244-3/Upstream/453039; hsa-let-7i/Downstream/2419362;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/44334, chr12-CpG: 37/Downstream/418886

Upstream sequence

gacaggtgccaagaatgtcatagtagcatacattccaaacttgataaaaccctggtgtcaaccgatagtataatagataaattggagaagagtcatacaa

Downstream sequence

GGGTTATGTTAGATTAATGAATATCATCTCTGTGTTTTCTGAAAGAATTTCCTGTTGAGATATAAAGGCCCATCTGATCACTGGATTGGGCTGAGCAGAG

Target sequence

aggagtacaatacagaaacaaaagtaaccaaattaTCAACAATTTCTCTCAGTTTTAAATTATCTTCTTTTGATATGTATGATAATATAGCACACCTATTCTGTATGTATTACTAAACAATACAAAATCAAAAGGAAGAAAATTATGAGTAGTTAAGAATATAGCATAGCAGCAACATTTCTGGGAGAGGAT