VISDB Viral Integration Site DataBase

VIS ID

TVIS30014894

Fusion event

HIV-BORCS5 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.2

Reference genome

Start

End

12612662/12459443 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-4474-3p ; hsa-mir-7108-5p ; hsa-mir-6870-3p ; hsa-mir-205-5p ; hsa-mir-6793-3p ; hsa-mir-4793-5p ; hsa-mir-5196-3p ; hsa-mir-6729-3p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-640 ; hsa-mir-1299 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-3653-5p ; hsa-mir-6777-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-4725-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/347407; hsa-let-7i/Downstream/305206;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/101949, chr12-CpG: 111/Downstream/102256

Upstream sequence

cttgttgcccaggctggagtgcaatggcataatctcggctcactgcaacctctaccttccaggttcaagtgattctcctgcctcagcctcccaagtagct

Downstream sequence

gctccaggttcattctttctctttgtggatatctagatattctagcacaaattgttgaaaaacttttttcccccattaaattgccttgagatctttgtaa

Target sequence

gggactataggcatgcaccaccacctccagctaatgttttgtatttagtagagacgggatttcaccatgttggtcaggctcgtctcgaactgctgacctcagatgatccacccgtctcagcctcccaaagctctgggattacaggcgtgagccactgagtccagccaaggtagcaaagatttttctcctatattttcttctagaagttttatagttttagcttccatatttaggtctgtgatccattccatatta