VISDB Viral Integration Site DataBase

VIS ID

TVIS30014913

Fusion event

HIV-KIF21A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q12

Reference genome

Start

End

39760831/39367334 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-140-3p ; hsa-mir-186-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-145-5p ; hsa-mir-195-5p ; hsa-mir-539-5p ; hsa-mir-432-5p ; hsa-mir-3156-3p ; hsa-mir-4446-5p ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-3682-3p ; hsa-mir-188-3p ; hsa-mir-1224-3p ; hsa-mir-1245b-3p ; hsa-mir-7705 ; hsa-mir-208b-5p ; hsa-mir-208a-5p ; hsa-mir-5683

Nearest miRNA

hsa-mir-1244-3/Upstream/13493255; hsa-let-7i/Downstream/2956366;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/221636, chr12-CpG: 120/Downstream/75075

Upstream sequence

GTAATGGCTAAAACCCACCATGTTAAGGGATATAAAAGATGTGGAATTTCACATTATTAGTTCAGTTACAGGCACTTTTTGAGATGGACTTCTCAGTATA

Downstream sequence

ATAGTGTATTATTTTTTAAATAGAAGAAAACACTGAGATTCCATTGTTGGCCATTTGCTGACATTTGCAGCTTCCATTCCAAAACTGTTATAGTAGAACA

Target sequence

AGCATCTATTTGGGGACACACTCTGGTTTGACACACATGAATGGTAAAAATGGCATGTGAACGAGAGCTCTGAACATTCATCTGGGTACTGGCAGTTGTCCGGGATAAAGCACCCAACTTCAAACACTGCATCATCTGAAAAAGGGGAAGAAACAAGGACTTTACTTGAACAATAAACAAGATACTATACAATCCAAAGTCTGAGGTAATGGCTAAAACCCACCATGTTAAGGGATATAAAAGATGTGGAATTTC