VISDB Viral Integration Site DataBase

VIS ID

TVIS30014914

Fusion event

HIV-ABCD2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q12

Reference genome

Start

End

39997451/39604033 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-411-5p ; hsa-mir-3117-3p ; hsa-mir-3607-3p ; hsa-mir-1208 ; hsa-mir-8083 ; hsa-mir-3169 ; hsa-mir-4759 ; hsa-mir-4276 ; hsa-mir-1257 ; hsa-mir-15b-3p ; hsa-mir-5187-3p ; hsa-mir-5190 ; hsa-mir-4699-3p ; hsa-mir-5094 ; hsa-mir-4724-5p ; hsa-mir-4671-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-4267 ; hsa-mir-5586-5p ; hsa-mir-605-5p ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-3074-5p ; hsa-mir-627-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-5003-3p

Nearest miRNA

hsa-mir-1244-3/Upstream/13729954; hsa-let-7i/Downstream/2719667;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/160336, chr12-CpG: 108/Downstream/501127

Upstream sequence

ACCACTTCTCCTGCTGGTGTAATTATGGGAACATTTTCACAAATAATTCCGTGATCCACATCAATAACTTTTCCTGTAATTAAGAAAAAGTGTAAGATAC

Downstream sequence

AAACATTATCACAGGTTTCTGATTAAATAACGTAAATTATTATGCAGTATAACAGGTAATTTCAATTATAAAGATAATTCACAGTAATAAATCACAGAAA

Target sequence

AATTTCCTATTGTTCCCCAAAATTACCTTGTACACTATAATTTTGATTTTCAACCTGGCAATAAAGCAGTAGAAATCAAATTTCTCTTTTCTCTCTGCTTTCTGAGGAATAACTGCTTCTGTAATTGAGCCACTGTGCATACCTTTCTTGATTTCCCCTTTCCAAATGCTCCTCCAAGTATTTAACATAAGGTACATGAATTCTGAGTTGTTTTGTATTAGTGTGATGGCAACAATCAGAAGATTCTTGAATATC