VISDB Viral Integration Site DataBase

VIS ID

TVIS30014942

Fusion event

HIV-TESPA1 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.2

Reference genome

Start

End

55365011/54971566 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-6071 ; hsa-mir-6828-3p ; hsa-mir-589-3p ; hsa-mir-8063 ; hsa-mir-96-3p ; hsa-mir-2681-3p ; hsa-mir-29c-3p ; hsa-mir-29b-3p ; hsa-mir-29a-3p ; hsa-mir-551b-5p ; hsa-mir-185-3p ; hsa-mir-3151-5p ; hsa-mir-3159 ; hsa-mir-4283 ; hsa-mir-4489 ; hsa-mir-4651 ; hsa-mir-4675 ; hsa-mir-4687-3p ; hsa-mir-4741 ; hsa-mir-608 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6782-5p ; hsa-mir-92a-2-5p ; hsa-mir-1910-3p ; hsa-mir-2682-5p ; hsa-mir-342-3p ; hsa-mir-34b-5p ; hsa-mir-4423-3p ; hsa-mir-449c-5p ; hsa-mir-5692a ; hsa-mir-6511a-5p ; hsa-mir-6808-5p ; hsa-mir-6818-3p ; hsa-mir-6893-5p ; hsa-mir-940

Nearest miRNA

hsa-mir-1244-3/Upstream/634252; hsa-let-7i/Downstream/2222938;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/382759, chr12-CpG: 33/Downstream/674638

Upstream sequence

ACACACTTAAACAGAATTAGAAAACAGAGGAAATTGGAAAATGTTCTGACTCCAACAATTCCCCTTCCAAAGACAAATGCAAGTCTGTTGATTAACTCTT

Downstream sequence

TATGGCCATTTTGAAGTTTAAATATTTGAAATCTTTTCAAAACACAGATACATAATGAAAATGTAACAGATACCCTTGCACCAGTCACTCTATTTTCACA

Target sequence

CTCAGGGCACCTGGCAGAGTGGACAGATAATCAGTAAATGCGGGCTCCTTGTTTATCCTCTTTCCTCTGTGGCCTTGGAGCATGGAATACTGTGGTAATTTAGAATCTCATGTTTAGAATGCGTTTTCCCTCTATCTTCTTCATTAGCTATTACCAAAAGTCAAGTGTACTCTCACTATCAATCATTGTCATTATTGTCCTTTAGTTTTTCTAGCTTTTCCATGCAATTAAGAAGTATTACACACTTAAACAGAA