VISDB Viral Integration Site DataBase

VIS ID

TVIS30014949

Fusion event

HIV-CS integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

56680103/56286013 (Hg38)

Orient

+

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-let-7b-5p ; hsa-let-7a-3p ; hsa-mir-193b-3p ; hsa-mir-324-5p ; hsa-mir-183-5p ; hsa-mir-28-5p ; hsa-let-7a-5p ; hsa-mir-6515-5p ; hsa-mir-4443 ; hsa-mir-6846-5p ; hsa-mir-6848-5p ; hsa-mir-4697-5p ; hsa-mir-4488 ; hsa-mir-1237-5p ; hsa-mir-6894-5p ; hsa-mir-765 ; hsa-mir-7154-3p ; hsa-mir-766-5p ; hsa-mir-4722-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-4433a-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-200b-5p ; hsa-mir-200a-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-4433b-3p ; hsa-mir-6165 ; hsa-mir-4662b ; hsa-mir-4426 ; hsa-mir-4647 ; hsa-mir-155-5p ; hsa-mir-365a-3p ; hsa-mir-365b-3p ; hsa-mir-4290 ; hsa-mir-4323 ; hsa-mir-4690-3p ; hsa-mir-4712-5p ; hsa-mir-5685 ; hsa-mir-770-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/1948699; hsa-let-7i/Downstream/908491;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/18666, chr12-CpG: 62/Downstream/13883

Upstream sequence

ACCATGTCCACAGTGATTTGGCCCACCACCGTCTTGCCATGTTGCTGCCTGAAAGTCTTAATTCTGGCCTGCTCCTTAGGTATCAGGTCAGCCAATATGT

Downstream sequence

aatggtaaattttatgttatgtatattttacactacttaaaaCATTTAAAAGAATTAGGCAAATGTATTGATATTCCCATCTCACTATACCACTGAGTAA

Target sequence

CTTTCAAATTCTAAAAAGAAAAGTAGAAGGACTAAGCAATGGTCTAAAAGTTTATTAGATTTCCTGCAAAGTAGGTGTGTCAAGAATTTGCTTTTTAGAAGCTGGCTTTATCTGCCAGGGAAGTCTGGTCAACTACTCTGCACAAATGAGGGTAAAAGAATTAGGCAgggggaagaaggaatgaggagttaatgtttaatgggaacagtttctcggtttgggcagacaaaagttctggagatggatggttgcaca