VISDB Viral Integration Site DataBase

VIS ID

TVIS30014952

Fusion event

HIV-BAZ2A integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

57015116/56621368 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1180-3p ; hsa-mir-877-3p ; hsa-mir-671-5p ; hsa-mir-425-5p ; hsa-mir-484 ; hsa-mir-328-3p ; hsa-mir-27b-3p ; hsa-mir-93-5p ; hsa-mir-23a-3p ; hsa-mir-17-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-4755-3p ; hsa-mir-485-5p ; hsa-mir-3188 ; hsa-mir-3975 ; hsa-mir-2467-5p ; hsa-mir-6884-5p ; hsa-mir-3915 ; hsa-mir-486-3p ; hsa-mir-874-5p ; hsa-mir-3928-3p ; hsa-mir-4699-5p ; hsa-mir-6805-5p ; hsa-mir-5680 ; hsa-mir-451b ; hsa-mir-548e-5p ; hsa-mir-449a ; hsa-mir-34a-5p ; hsa-mir-34c-5p ; hsa-mir-449b-5p ; hsa-mir-5006-5p ; hsa-mir-3972 ; hsa-mir-1202 ; hsa-mir-3144-3p ; hsa-mir-4668-5p ; hsa-mir-625-5p ; hsa-mir-3148 ; hsa-mir-6798-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6783-5p ; hsa-mir-6753-5p ; hsa-mir-1911-3p ; hsa-mir-3157-5p ; hsa-mir-4423-3p ; hsa-mir-4722-5p ; hsa-mir-4691-3p ; hsa-mir-449c-5p ; hsa-mir-34b-5p ; hsa-mir-2682-5p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-512-5p ; hsa-mir-4304 ; hsa-mir-4253 ; hsa-mir-6079 ; hsa-mir-4669 ; hsa-mir-198 ; hsa-mir-4634 ; hsa-mir-4745-3p ; hsa-mir-1538 ; hsa-mir-6828-5p ; hsa-mir-4783-3p ; hsa-mir-6837-5p ; hsa-mir-4685-5p ; hsa-mir-3918 ; hsa-mir-7113-5p ; hsa-mir-7160-3p ; hsa-mir-4802-3p ; hsa-mir-15b-5p ; hsa-mir-16-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-6838-5p ; hsa-mir-15a-5p ; hsa-mir-103a-3p ; hsa-mir-107 ; hsa-mir-6873-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-7162-3p ; hsa-mir-4649-3p ; hsa-mir-301b-5p ; hsa-mir-301a-5p ; hsa-mir-146a-3p ; hsa-mir-642b-3p ; hsa-mir-642a-3p ; hsa-mir-6730-3p ; hsa-mir-4653-5p ; hsa-mir-3921 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6089 ; hsa-mir-5008-5p ; hsa-mir-8485 ; hsa-mir-193a-3p ; hsa-mir-193b-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/2284054; hsa-let-7i/Downstream/573136;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/132450, chr12-CpG: 55/Downstream/8473

Upstream sequence

ATATCCTGTTTTTGTAAATATTAATAACAACATGTCGATGGCTCACAGAAATCAGAGAATTAAAAAGAATGGGAAGTTATTTAGTATGTGAGATCAGTTT

Downstream sequence

CTCCACCTGTCTCTTCTGAACTGTCATCAGAACCACAACCACTTCATTTACGAGAAGCTTCCTAGACACATAAAATTGTCTTTGTGCTATGCAATGTGGT

Target sequence

AAGAATGGGAAGTTATTTAGTATGTGAGATCAGTTT