Basic Information
VIS ID
TVIS30014954
Fusion event
HIV-chr12 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
57402479/57008695 (Hg38)
End
57402429/57008695 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/2671381; hsa-let-7i/Downstream/185809;
Nearest TSS
ENST00000382841/Upstream/2249; ENST00000555857/Downstream/7825;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/2007, chr12-CpG: 29/Downstream/69796
Nearby gene
TAC3(No orient, 1301)
Upstream sequence
CCGCCCCCCACTATACAGCTGTCATTCCAAAGTGGCCCCAAGTCAGGCTGTAGGAAGATAGAATTTTCACTAGAATGAAAGGACTGCAGGAAGTGGCCTC
Downstream sequence
TGGCTCTGTGGCCCTGTCCTTACACTGCCTTGGGAAATCTATGTGTTGATGTTTTATCAGTGCAATTCAGGGGCATAACAAAGGCCCCTGTACCACGCTA
Target sequence
TAGGAAGATAGAATTTTCACTAGAATGAAAGGACTGCAGGAAGTGGCCTC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate