VISDB Viral Integration Site DataBase

VIS ID

TVIS30014960

Fusion event

HIV-R3HDM2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

57761420/57367350 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-671-5p ; hsa-mir-125b-5p ; hsa-let-7c-5p ; hsa-mir-6895-5p ; hsa-mir-1972 ; hsa-mir-6079 ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-6828-5p ; hsa-mir-4755-3p ; hsa-mir-4786-3p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-5693 ; hsa-mir-6715b-5p ; hsa-mir-4269 ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-5582-5p ; hsa-mir-1299 ; hsa-mir-3202 ; hsa-mir-4493 ; hsa-mir-4533 ; hsa-mir-6128 ; hsa-mir-875-3p ; hsa-mir-518c-5p ; hsa-mir-383-3p ; hsa-mir-514a-5p ; hsa-mir-4753-5p

Nearest miRNA

hsa-mir-1228/Upstream/172774; hsa-let-7i/Downstream/145338;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/123460, chr12-CpG: 99/Downstream/107942

Nearby gene

R3HDM2(No orient, 56887)

Upstream sequence

cctcataccagtgaactaaagctaaagcatccatgacaggaaagttcaatagaactttctgtgatgatgaaactggggctactaagtatttgaattgtag

Downstream sequence

gtgctcaaacttctttcttttctctcaggaatcactgttctatgctactctttgtccaatatctgaaaacattttttcatatactttgtccaattattca

Target sequence

ttagtgtaactgaggaactcaatttttatgtaaatatccacatgtagctagtggctactgtattacacagtgtaggtttaggggaaccctctgcaaatttccagagctctctttttcttaagaagctctctcctcttaaatattctgccacacaattccagctgccttggcttctcgattcctacctctgtctcctcaattcaagattgccagctctgtatgtgtatccctcccaaccctagtttcaacccagaa