Basic Information
VIS ID
TVIS30014978
Fusion event
HIV-chr12 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q22
Reference genome
GRCh37/hg19
Start
93941574/93547798 (Hg38)
End
93941511/93547798 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/6802649; hsa-mir-1178/Downstream/1013991;
Nearest TSS
ENST00000382841/Upstream/47051; ENST00000547229/Downstream/22016;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/80035, chr12-CpG: 297/Downstream/22389
Upstream sequence
ttctaacaagagcctgttattctgacacgggggcccagatgctggccttgcagcagtgtgcttttgatattaacgtttagtttacagaaaagctctgaac
Downstream sequence
tattgttatgtctcaaaatcggcccttacaatctcacgtgcccacctcttcagcaatagtccccagggctagagggattgaatagttttaatttctggtc
Target sequence
gatgctggccttgcagcagtgtgcttttgatattaacgtttagtttacagaaaagctctgaac
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate