VISDB Viral Integration Site DataBase

VIS ID

TVIS30014981

Fusion event

HIV-TMEM263 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q23.3

Reference genome

Start

End

107352896/106959299 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-373-3p ; hsa-mir-124-3p ; hsa-mir-218-2-3p ; hsa-mir-340-5p ; hsa-mir-487a-5p ; hsa-mir-487b-5p ; hsa-mir-584-5p ; hsa-mir-6878-3p ; hsa-mir-758-5p

Nearest miRNA

hsa-let-7i/Upstream/2367583; hsa-mir-1178/Downstream/1676511;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/2988, chr12-CpG: 46/Downstream/27481

Upstream sequence

ATTTTAATGTATTACTTAAGGGTAACATTTAAAAATGGTCATTTTGAAttttttcttttttgatatggagtcttgctctgtcgcccaggctggagtgcag

Downstream sequence

tggcttgatctccactcactgcaacatccgtctcccaggttcaagagattttcctgcctcagcctccctggtagctgggattacaggtacccgccaccac

Target sequence

ctgtcgcatagtagggctcaagtatatgttgaattaatgaTTCAGTGAGTTCAGGGCAGATAGTTTGTATAGAATTTAATAATTTTAATGTATTACTTAAGGGTAACATTTAAAAATGGTCATTTTGAAttttttcttttttgatatggagtcttgctctgtcgcccaggctggagtgcag