VISDB Viral Integration Site DataBase

VIS ID

TVIS30015000

Fusion event

HIV-ZCCHC8 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

122975600/122490906 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-1228-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4486 ; hsa-mir-7112-5p ; hsa-mir-383-3p ; hsa-mir-1288-5p ; hsa-mir-6765-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-378a-5p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-3189-3p ; hsa-mir-212-5p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-660-3p ; hsa-mir-5193 ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6878-3p ; hsa-mir-6744-3p ; hsa-mir-4757-5p ; hsa-mir-6778-3p ; hsa-mir-4701-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-4735-5p ; hsa-mir-1228-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6131 ; hsa-mir-3663-5p

Nearest miRNA

hsa-let-7i/Upstream/1046554; hsa-mir-3612/Downstream/205001;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/68021, chr12-CpG: 42/Downstream/9738

Upstream sequence

TTGTGCAAAGAATACACGGATTTTATTTAAAAATTCTGTGTACTTAATTTTTAAATAGATACTACATGTAAATGGTTCAAAATCCAAGAGAAGTAAAAGG

Downstream sequence

CTGGAAAAGATAAAATCAAAATGCAAAGCAAGAAAAAATACTGAGATCTGCTTTCCCCAGCCCTCCAGGTCAAGAACCAAGCTCATCATATATTCGGTAG

Target sequence

GTTACATAATGAAAAGCTCCCTTCCTACCCTGTCTCTTGGCCATCTATTTCTGCAACACAAAGATAGTCCATATATTCAGGTCTTCCACATCCTCCTCCCAGAGATTCTTAATACGTACATAAGGAAACACCAATATAAATATGAAA