Basic Information
VIS ID
TVIS30015002
Fusion event
HIV-RSRC2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
End
122997861/122513482 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7i/Upstream/1069130; hsa-mir-3612/Downstream/182425;
Upstream sequence
AAATTCTCCAGATTTCAAGGTAGTAAATAATCTCATATTCTGAAATTAAAGAACTACATTTAAAACTTTATCTGAAAGATCACCAAGTAATCTATATATC
Downstream sequence
AATGACATTTTGGATGCTATTAACGGCTTCACTTTTAAAAAAATCCAAAAACACAAACAGAATAGACTTATGGCATTCAAGTAAATAAGAGCTTAAAAAA
Target sequence
AATCCTGACCTTTAAGCCAAAAAAGAAACCAATATAAAAGGTCTATACATGGTAGTTTCTTAAGAAAAAAATTCTCCAGATTTCAAGGTAGTAAATAATCTCATATTCTGAAATTAAAGAACTACATTTAAAACTTTATCTGAAAGATCACCAAGTAATCTATATATC
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate