VISDB Viral Integration Site DataBase

VIS ID

TVIS30015004

Fusion event

HIV-RSRC2 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q24.31

Reference genome

Start

End

122998227/122513477 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-1-3p ; hsa-mir-26b-5p ; hsa-mir-197-3p ; hsa-mir-552-5p ; hsa-mir-6839-3p ; hsa-mir-4540 ; hsa-mir-6868-3p ; hsa-mir-6793-5p ; hsa-mir-629-5p ; hsa-mir-4795-5p ; hsa-mir-1248 ; hsa-mir-1237-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-6748-3p ; hsa-mir-6838-3p ; hsa-mir-649 ; hsa-mir-490-3p ; hsa-mir-1228-3p ; hsa-mir-6884-3p

Nearest miRNA

hsa-let-7i/Upstream/1069125; hsa-mir-3612/Downstream/182430;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/12380, chr12-CpG: 44/Downstream/13237

Upstream sequence

GAAAAAAATTCTCCAGATTTCAAGGTAGTAAATAATCTCATATTCTGAAATTAAAGAACTACATTTAAAACTTTATCTGAAAGATCACCAAGTAATCTAT

Downstream sequence

CTACAACTGGTTGCATTAAAATGGCCATTGAAGATTTGGAATTAATACCATTCACTAAGGTGAATGGAAAGAAGGGGTGAGCTCACACTTTTGCTGCTGT

Target sequence

ATATCAATGACATTTTGGATGCTATTAACGGCTTCACTTTTAAAAAAATCCAAAAACACAAACAGAATAGACTTATGGCATTCAAGTAAATAAGAGCTTAAAAAATATTTGTCAGAGTTAATGAAATTACAATCTAGCATATACTAAATCCAATTTTATAGTAAATTATTTCCATACTAGTTTCAGAAAGAAGATACGTGTGA