Basic Information
VIS ID
TVIS30015009
Fusion event
HIV-TMED2 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q24.31
Reference genome
End
124080413/123596011 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-let-7i/Upstream/59477; hsa-mir-3612/Downstream/741170;
Upstream sequence
ccagctactcaggaggctgaggtggcaggattgcttgagtacagttcaaggttgcagtgaactatgattgtgtcatggcattccagcctgggcaacagag
Downstream sequence
caaACAAAAAAGTCTTTGCTTTGGAGTATGTTGAGTTGCTTGGAGACAAAAGTATTTAGAGTATAGGTGACCCATAGGttacaatgacttcacttagaaa
Target sequence
aaaacagaaaaaattagtcaaatgggctggtgcatacctgtactcccagctactcaggaggctgaggtggcaggattgcttgagtacagttcaaggttgcagtgaactatgattgtgtcatggcattccagcctgggcaacagag
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate