Basic Information
VIS ID
TVIS30015018
Fusion event
HIV-chr13 integration
Validated
Yes
Detection method
LM PCR
Data source
Curated
Sample type
PBMC
Disease
HIV-infected disease (HID)
Quality evaluation
Good
Reported year
2014
PubMed ID
24968937
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q12.11
Reference genome
GRCh37/hg19
Start
20479371/19905231 (Hg38)
End
20479345/19905231 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1267/Downstream/528547;
Nearest TSS
ENST00000623511/Upstream/41373; ENST00000620447/Downstream/53439;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/40282, chr13-CpG: 194/Downstream/52177
Nearby gene
ZMYM5(No orient, 41595)
Upstream sequence
ctcccaagtagctgagactacagtcatgcaccaccacgctccagttaatttttgtatttttagtagagatggggtttcaccaagttgctgaggctggtct
Downstream sequence
ggaactcctgacctcaagtgatctgcccaactcggcctcccaaaatattgggattacaggcgtgagccactgcgcctggccTATttttttctatttctga
Target sequence
tttcaccaagttgctgaggctggtct
Reference
Maldarelli, F., et al. Specific HIV integration sites are linked to clonal expansion and persistence of infected cells. Science,2014, 345(6193): 179-183.
Curate