VISDB Viral Integration Site DataBase

VIS ID

TVIS30015021

Fusion event

HIV-XPO4 integration

Validated

Yes

Detection method

LM PCR

Data source

Curated

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Good

Reported year

2014

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr13

Cytoband

q12.11

Reference genome

Start

End

21438520/20864636 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-877-3p ; hsa-mir-18a-3p ; hsa-mir-146b-5p ; hsa-mir-16-5p ; hsa-mir-6079 ; hsa-mir-3190-3p ; hsa-mir-3165 ; hsa-mir-6880-5p ; hsa-mir-8071 ; hsa-mir-6828-5p ; hsa-mir-873-5p ; hsa-mir-6809-3p ; hsa-mir-4753-3p ; hsa-mir-4477a ; hsa-mir-302d-5p ; hsa-mir-302b-5p ; hsa-mir-130b-5p ; hsa-mir-16-1-3p ; hsa-mir-365b-3p ; hsa-mir-365a-3p ; hsa-mir-100-3p ; hsa-mir-548l ; hsa-mir-548n ; hsa-mir-671-5p

Nearest miRNA

hsa-mir-4499/Upstream/430790; hsa-mir-1267/Downstream/3297780;

Nearest TSS

Nearest CpG islands

None/Target, chr13-CpG: 551/Upstream/90518, chr13-CpG: 80/Downstream/37984

Upstream sequence

tagagaggaaactgaggtcacatggctggtaaatgTTCCTTGAGCAATACTAATCTACCCTGAAACACACATGCCACTGAAGATAGAGCGAATAAGCACT

Downstream sequence

TTCATTGTTAATGATCACTGAAACATTCCTAACTATTTGTTTTTACATCCAAGCCTTTTTCTGCCCTTTGGAGGTGGGTGGGTGTTGGATGTGAGGGGGC

Target sequence

TAAAAATTTTAAGGACAAGAAACCGGAAATCCTTAACCATGGATTTCAACAATGAAGCAAAATCTAAGGTACTCTAAGAATTTTAGTTATAgaactctgaagaccatctaaatcaattcctccattttacaggagctgaaggatgccccaagagatagagaggaaactgaggtcacatggctggtaaatgTTCCTTGAGCAATACTAATCTACCCTGAAACACACATGCCACTGAAGATAGAGCGAATAAGCACT